Bioinformatics & data analysis

From raw reads to biological insight

Automated, version-controlled pipelines move your project from raw sequence data to publication-ready results — industry-standard workflows tuned to your platform, with transparent QC at every step and PhD-level scientists guiding interpretation.

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Analysis packages

Choose your level of analysis

Every sequencing service can pair with one of three analysis packages — from raw data to fully interpreted results.

Standard Packages

Automated, version-controlled secondary analysis for routine workflows.

Data QC reports
Read alignments (BAM)
Standard analysis toolset for the specific workflow

Best for teams running their own downstream analysis.

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Advanced Packages

Everything in Standard, with deeper interpretation layered on.

All standard deliverables
Advanced reporting through extended toolsets
Workflow-specific deeper analysis

Best for teams that want results interpreted for them.

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Specialized Packages

Everything in Advanced, built around your study.

Custom analysis matched to project goals
Hourly analysis options
Dedicated full-time bioinformatics support

Best for novel, custom or multi-omic study designs.

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Analysis pipelines

Pipelines for every data type

RNA-Seq Analysis

Alignment, quantification, differential expression, pathway analysis and gene ontology.

Single-Cell Analysis

QC, clustering, cell-type annotation, trajectory inference and differential abundance.

Spatial Analysis

Spatial alignment, region annotation and tumor-microenvironment deconvolution.

Variant Analysis

Germline and somatic calling, annotation, CNV and structural-variant detection.

Immune & Repertoire

TCR/BCR clonotype analysis, repertoire diversity and longitudinal clonal tracking.

Multi-Omic Integration

Harmonize modalities and run joint analyses into one integrated biological story.

What you receive

Transparent, publication-ready deliverables

Step 1

Raw data (FASTQ)

Raw sequence files for every sample, organized and documented.

Step 2

Alignments (BAM)

Optimized read alignments to the appropriate reference species.

Step 3

QC & analysis reports

Multi-stage QC plus expression matrices, VCF variants, clonotypes and more.

Step 4

Publication-ready results

Custom analysis and support carried through to publication.

Beyond the FASTQ

Visualizations we deliver

Standard, version-controlled outputs with every project — plus dedicated analyst support to query results and iterate on figures without waiting.

Deliverables include

Alignment stats

PCA plots

Correlation plots

Heatmaps

Gene networks

Alignment stats

PCA plots

Correlation plots

Heatmaps

Gene networks

Scoring heat maps

Delta distribution

Clonotype expansion

Cell-type annotation

UMAP / t-SNE cluster plots

Scoring heat maps

Delta distribution

Clonotype expansion

Cell-type annotation

UMAP / t-SNE cluster plots

Figures & files delivered with every project — hover to pause

FAQs

Plan your project

Resources & insights

Go deeper

More resources

Tech sheet & brochure

RNA-Seq bioinformatics overview

Validated gold-standard pipelines, workflow specificities and custom visualization deliverables.

Analysis overview

Bioinformatics services

End-to-end pipelines covering QC, FASTQ/BAM/VCF generation, germline and somatic annotation, CNVs, SVs, joint genotyping and gVCF outputs.

Whitepaper

Comprehensive variant detection

Computational precision pipelines and gold-standard GATK workflows that turn raw reads into annotated, publication-ready insight.

Explore related analysis services

Analysis matched to your platform

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RNA-Seq Data Analysis

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Whole Exome Data Analysis

Bioinformatics

Spatial Bioinformatics & Analysis

Need help turning data into insight?

Tell us about your data and goals — a PhD scientist replies within one business day with the right analysis package and a tailored plan and quote.

Automated, version-controlled pipelines
Transparent QC at every step
PhD-level scientists guiding interpretation
Publication-ready results & reporting

Request a quote

Ready to launch your study?

Share your samples and goals — a doctoral-level scientist responds within one business day with a study plan and competing blind quotes.

Expert-guided study design & service matching
Competitive quotes, adaptable turnaround times
End-to-end bioinformatics & reporting
Run by accredited facilities across the nationwide network

Administered by Syntax of Life Private Limited

Request a quote

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Ready to launch your study?

Share your samples and goals — a doctoral-level scientist responds within one business day with a study plan and competing blind quotes.

Expert-guided study design & service matching

Competitive quotes, adaptable turnaround times

End-to-end bioinformatics & reporting

Run by accredited facilities across the nationwide network

Administered by Syntax of Life Private Limited