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Shotgun & amplicon metagenomics added — subsidized partner rates now live
Partners
Meet our partners
The Gateway is operated by Syntax of Life — and powered by a growing network of independent partners: university genomics centers, bioinformatics teams and biotech suppliers who deliver services through the platform on their own terms.
Partner directory
2 verified partners — and growing
CAS-NGSPartner 01
CAS-NGS — Center for Advanced Studies in Agriculture and Food Security
Sequencing · Genomics · Training
In-house genomics platform at the University of Agriculture Faisalabad — subsidized WGS, RNA-seq, metagenomics and targeted sequencing.
View partner profileGenexaPartner 02
Genexa Analytics
Bioinformatics · Analysis services
Specialist bioinformatics provider — genome assembly, RNA-seq, variant calling, metagenomics, GWAS and phylogenetics on demand.
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CAS-NGS
CAS-NGS
Limited-time subsidized ratesCenter for Advanced Studies in Agriculture and Food Security (CAS-AFS)
University of Agriculture Faisalabad
An in-house genomics platform built to provide accessible, reliable and locally available sequencing and bioinformatics for Pakistani scientists — bridging the national gap in end-to-end genomics from sample preparation to interpretation, training and capacity building.
CAS-NGS
Center for Advanced Studies in Agriculture & Food Security
University of Agriculture Faisalabad
Subsidized Sequencing Services
High-impact genomics at affordable research rates — in-house at UAF.
Limited-time subsidized rates — till 30 Dec 2026
Why in-house sequencing matters
A national scientific capability, not just a service.
1
Reduce delays
Faster sample processing and project turnaround within Pakistan.
2
Lower costs
Affordable research rates with reduced dependence on international outsourcing.
3
Protect resources
Local biological material, germplasm and pathogen data remain better protected.
4
Retain data ownership
Sequencing data and analysis outputs stay with Pakistani scientists and institutions.
5
Build expertise
Hands-on training develops local sequencing and bioinformatics capacity.
Our Samples. Our Data. Our Discovery.
Success stories
Proven genomics milestones from local capacity
Cotton genome
- First locally adapted/developed cotton variety sequenced and assembled
- Gap-free, high-quality genome assembly
- Foundation for crop improvement and functional genomics
Hemp genome
- Local hemp genomes successfully sequenced
- Supports comparative genomics, breeding and trait discovery
- Demonstrates capacity for non-model plant genomes
Microbial genomes
- Microbial genomes successfully sequenced and assembled
- High-quality, no-gap genome assemblies
- Useful for pathogen surveillance, diagnostics and biodiversity
Subsidized rate cards
Introductory commercial rates
Whole Genome Sequencing (WGS)
| Genome category | Size / coverage | Subsidized rate (PKR) | Includes |
|---|---|---|---|
| Microbial genomes | ≤ 10 Mb · 30–50× coverage | PKR 25,000 | Genome assembly, annotation, QC report and phylogeny — free of cost |
| Small genomes | ≤ 1.0 Gb | PKR 50,000 – 100,000 | Sequencing only · advanced bioinformatics optional (+PKR 20,000–50,000) |
| Medium genomes | ≤ 2.0 Gb | PKR 100,000 – 200,000 | Sequencing only · advanced bioinformatics optional (+PKR 50,000–100,000) |
| Large genomes | > 2.0 Gb | Quote-based | Priced by genome size, coverage and project scope |
Transcriptome sequencing (RNA-seq)
| Service | Rate | Notes |
|---|---|---|
| RNA-seq (>12 samples) | PKR 60,000 / sample | High-quality total RNA supplied by client |
| Downstream analysis | +PKR 20,000 – 75,000 | RNA-seq, differential gene expression & functional analysis |
Includes bioinformatics analysis, rRNA masking/subtraction, adapter removal, De novo transcriptome assembly, gene prediction, functional analysis (GO & KEGG) and expression analysis. RNA-stabilized tissue or fresh samples accepted — final quote depends on submission option and project scope.
Metagenomics
| Package | Output / samples | Rate | Includes |
|---|---|---|---|
| Whole-genome shotgun | 3 Gb / sample | PKR 75,000 / sample | Sequencing output + taxonomic profiling & abundance (optional downstream analysis — functional annotation, resistome profiling: +PKR 10,000–30,000) |
| Amplicon metagenomics | > 25 samples | PKR 25,000 / sample | 16S rRNA / ITS / 18S / COI (optional diversity & taxonomic analysis — ordination, differential abundance: +PKR 5,000–15,000) |
Deep shotgun metagenomics, advanced functional profiling, resistome/virome analysis, MAG recovery and publication-level downstream analysis are charged separately.
Targeted sequencing — rapid & cost-effective
Plant clone / diversity
Intragenic detection · SNP identification · haplotyping
Targeted gene sequencing
Resistance genes · virulence genes · specific mutations
Genome-wide variant
SNP discovery · SV identification · genomic variation
Custom solution projects
ITS / 16S / COI · exome, GBS · CRISPR studies
| Package | Samples | Rate | Includes |
|---|---|---|---|
| Custom targeted sequencing | > 50 samples | PKR 25,000 / sample | PCR amplicon / target genes included (optional customized bioinformatics — variant calling, haplotyping, report: +PKR 5,000–20,000) |
Rates are subsidized for a promotional period valid until December 30, 2026. Final pricing depends on genome size, number of samples, required depth/coverage or read count, and any additional downstream bioinformatics requested.
Complete service workflow
1 Consultation2 Sample QC3 Library preparation4 Sequencing5 Basecalling / QC6 Bioinformatics7 Report discussion
Integrated experimental and computational support under one platform — sample preparation, sequencing, bioinformatics pipelines and publication-ready outputs, instead of fragmented outsourcing.
Training & capacity building
- 1
Experimental design
Sample planning, sequencing strategy and project scope.
- 2
Quality control
DNA/RNA quality, Qubit quantification and pre-library QC.
- 3
Sequencing workflows
Library preparation, sequencing concepts and data generation.
- 4
Bioinformatics
FASTQ QC, assembly, annotation, expression analysis and visualization.
- 5
Data interpretation
Publication-ready outputs and biological interpretation.
Who can benefit
Plant breedersPlant pathologistsMicrobiologistsBiotechnology researchersEnvironmental scientistsBiodiversity researchersMedical & public health researchersIndustry R&D teamsMS, MPhil and PhD scholars
Data Privacy — ownership & confidentiality
Project data, biological material information and analysis outputs remain the property of the client or research team unless agreed otherwise through formal collaboration or publication arrangements.
Generate domestically. Analyze domestically. Protect domestically.
Contact CAS-NGS
cas.afs@uaf.edu.pk 041-9201919 · 041-9200161-71 ext 4241, 4244 · 0316-8662119 CAS-AFS, University of Agriculture Faisalabad
Social: CAS_NGS · Cas-Ngs · cas_ngs · CAS-NGS
Genexa Analytics
Transforming complex biological data into useful insights.
Professional bioinformatics analysis services — advanced computational solutions for genomics, transcriptomics and metagenomics, from raw data to meaningful biological insight.
Genome assembly
High-quality de novo and reference-based genome assembly.
PKR 20,000 – 100,000
RNA-Seq analysis
Differential expression, transcript assembly and functional interpretation.
PKR 20,000 – 75,000
Variant calling
SNP, INDEL and structural variant detection with high accuracy.
PKR 5,000 – 50,000
Metagenomic analysis
Taxonomic profiling, diversity analysis and functional characterization.
PKR 5,000 – 30,000
GWAS analysis
Genome-wide association studies for trait discovery and population genetics.
PKR 5,000 – 25,000
Phylogenetic analysis
Evolutionary relationships and phylogenetic tree construction.
PKR 5,000 – 15,000
Customized analysis
Tailored analysis workflows to meet your specific research needs.
Quote on request
Why choose Genexa Analytics
Expert bioinformatics team Fast turnaround time Confidential & secure data handling Publication-ready results Competitive pricing
genexaanalytics@gmail.com +92 314 6272724 · +92 335 1311404
LinkedIn & Facebook: Genexa Analytics · Instagram: @genexa_analytics
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Run a sequencing lab, bioinformatics team or biotech supply company?
Verified partners keep their own pricing, workflow and project decisions — the Gateway routes demand, handles blind quoting and governs quality.